1. Catalogs
  2. Genedrive
  3. Genedrive® 96 SARS-CoV-2 Kit

Genedrive® 96 SARS-CoV-2 Kit

Genedrive® 96 SARS-CoV-2 Kit
1 / 32 PagesView full catalog

Genedrive® 96 SARS-CoV-2 Kit

Product catalog summary
Intended Use: The Genedrive® 96 SARS-CoV-2 Kit is designed for the qualitative detection of SARS-CoV-2 RNA in upper respiratory specimens from individuals suspected of COVID-19. It targets the E and N genes of the virus and is intended for use by laboratory professionals skilled in molecular biology techniques.
Indications for Use: The kit identifies SARS-CoV-2 RNA, detectable during the acute infection phase. Positive results indicate virus presence but require clinical correlation for diagnosis. Negative results do not rule out infection and should be considered with clinical observations and patient history.
Principles of the Procedure: The kit employs a one-step RT-PCR process to amplify specific viral genetic sequences. It includes lyophilised reagents in a 96-well plate format, rehydrated with specimen or control material, involving DNA amplification and end-point melt curve analysis.
Compatible RNA Extraction Methodologies: Validated with RNA extraction kits from Qiagen and Beckman Coulter, compatible with Real-Time PCR instruments like Roche LightCycler 480 II, Applied Biosystems 7500 Fast, and Bio-Rad CFX96.
Kit Components and Materials Required: Includes a 96-well plate with lyophilised reagents, optical film seal, and desiccant pouch. Additional materials required include RNA extraction kits, controls, molecular grade water, and specific lab equipment.
Specimen Collection and Handling: Specimens should be collected using Dacron or polyester flocked swabs in viral transport media, stored at 4˚C short-term or -70˚C long-term. Avoid more than one freeze-thaw cycle to prevent RNA degradation.
Warnings and Precautions: Store the kit between 2˚C and 30˚C, use before expiry. RNA is sensitive to degradation; follow proper handling procedures. Each reaction well is single-use; discard if protective foil is compromised.
Limitations of Use: Validated for specific PCR systems; deviations may lead to erroneous results. Negative results do not conclusively rule out infection; false positives or negatives may occur due to contamination or improper handling.
Test Failures and Causes: Failures may occur due to sample timing, improper adherence to instructions, poor RNA handling, ethanol carryover, RNA extraction failure, incorrect input/eluate volumes, or omission of specimen/control in reaction wells.
RNA Extraction Procedure: Compatible with specific RNA extraction kits. Human Lymphocyte RNA can be used as an optional extraction control, indicated by RNase P detection. Reconstitution and storage instructions emphasize maintaining RNA integrity.
Extraction Control Requirements: Table 3 outlines requirements for various RNA extraction kits, including specimen input, lysis buffer volume, and extraction control quantities. Specific instructions for RNAdvance Viral RNA Purification Kit and QIAamp Viral RNA Mini Kit are detailed.
Manual Reaction Setup: Instructions for sealing the plate with optical film and ensuring proper mixing are provided. Emphasis on maintaining a cool environment during specimen addition and mixing to ensure test sensitivity and specificity.
Real-Time PCR Instrument Setup: Instructions for setting up the assay on Roche LightCycler 480 II and ABI 7500 Fast Real-Time PCR systems are provided, including downloading template files and inputting cycling parameters.
Overview: Detailed instructions for setting up and running PCR assays using various real-time PCR systems, including setup procedures, data analysis instructions, and troubleshooting guidelines for the Genedrive 96 SARS-CoV-2 assay.
1. Instrument Setup: Instructions for ABI 7500 Fast, Bio-Rad CFX96, and Roche LightCycler 480 II, including experiment type, reaction volume, and cycling parameters.
2. Data Analysis: Instructions for analyzing data using specific modules and exporting data for further analysis.
3. Result Interpretation: Use the interpretation matrix to determine result validity based on RNase P, SARS-CoV-2, and IPC peaks. Automated interpretation available with Genedrive 96 Exporter software.
4. Quality Controls: Includes primers and probes for RNase P and IPC to ensure successful RNA extraction and PCR function. Positive and negative controls recommended for assay validation.
5. Troubleshooting: Common issues include absence of expected peaks due to contamination, PCR failure, or poor sampling. Solutions involve cleaning, repeating tests with new kits, and ensuring correct instrument parameters.
Specifications and Procedures: Emphasizes correct PPE use, instrument, and RNA extraction parameters. Specimen input to eluate volume ratio should be 5:1. Troubleshooting guidance for RNase P peak issues.
Analytical Sensitivity: Limit of Detection (LoD) is 10 copies/reaction or 0.5 copies/μl, verified across platforms using spiked samples and probit analysis.
Performance Characteristics: Performance data obtained using manual result interpretation across RNA extraction kits and PCR platforms, with detailed LoD data.
Analytical Specificity: Exclusive for non-CoV-2 human pathogens, with in silico and experimental assessments ensuring no cross-reactivity. Specificity data detailed in tables.
Precision: Includes intra-assay, inter-assay, inter-lot, and inter-instrument variability, with results expressed as a ratio of internal PCR control signal intensity.
Inclusivity: Detects all analyzed SARS-CoV-2 sequences in the GISAID database using a dual target design. Detailed sequence alignment analysis provided.
Diagnostic Accuracy: In a study of 290 specimens, sensitivity was 100%, specificity 99.0%, PPV 99.4%, NPV 100%, overall diagnostic accuracy 99.6%.
Quick Reference Guide: Step-by-step guide for manual reaction setup, including preparation, pipetting, and loading instructions.
Manufacturer Information: Genedrive Diagnostics Ltd. is the manufacturer, with contact and distributor information provided.
See more

Catalog excerpts

Genedrive® 96 SARS-CoV-2 Kit-1

Genedrive® 96 SARS-CoV-2 Kit ID-CoV2-01-LPC (Low Profile Version) ID-CoV2-01-FPC (Fast Plate Version) ID-CoV2-01-BPC (Bio Plate Version) For the most up to date version of this document, please visit www.genedrive.com IMPORTANT: Please read these instructions prior to using this kit. Terms & Abbreviations cDNA Conformite Europenee-in vitro diagnostic Deoxyribonucleic acid Compatible RNA extraction methodologies Deoxyribonucleotide triphosphates Materials required but not supplied Specimen collection, handling and storage Polymerase Chain Reaction Storage and shelf life Real-Time PCR Real-Time Polymerase Chain Reaction Operating conditions Ribonucleic acid Reverse Transcription Polymerase Chain Reaction Test procedure Severe acute respiratory syndrome coronavirus 2 Result interpretation World Health Organization Genedrive® 96 Exporter – result interpretation Quality controls Performance characteristics Quick reference guide – manual set up Manufacturer details

 Open the catalog to page 1
Genedrive® 96 SARS-CoV-2 Kit-2

Intended use The Genedrive® 96 SARS-CoV-2 Kit is intended to be used for the qualitative detection of RNA from SARS-CoV-2 in upper respiratory specimens from individuals suspected of COVID-19 by their healthcare provider. Negative results do not preclude SARS-CoV-2 infection and should not be used as the sole basis for patient management decisions. Negative results must be combined with clinical observations, patient history, and epidemiological information. Results are for the identification of SARS-CoV-2 RNA. The SARS-CoV-2 RNA is generally detectable in upper respiratory specimens during the...

 Open the catalog to page 2
Genedrive® 96 SARS-CoV-2 Kit-3

Principles of the procedure Genedrive 96 SARS-CoV-2 Kit is a simplified one-step test designed for the diagnosis of SARS-CoV-2 from RNA extracts derived from upper respiratory swabs. All the reagents required for the test are supplied as a lyophilised bead, to which the specimen is added prior to running the test. The genetic targets are species-specific sequences which are located in the E and N genes of the virus. The target is amplified via a one-step RT-PCR reaction, whereby RNA conversion to cDNA and subsequent asymmetric amplification of cDNA occurs within the same well without the need...

 Open the catalog to page 3
Genedrive® 96 SARS-CoV-2 Kit-4

For all RNA extraction methodologies, ensure optional or additional steps suggested in the extraction kit instructions for use are taken to reduce ethanol or wash buffer carryover as much as possible to reduce the chance of reaction inhibition, which could impact test sensitivity. Compatible Real-Time PCR instrumentation The Genedrive 96 SARS-CoV-2 Kit is available as low profile Bio or fast 96-well plates and is validated for use with the following Real-Time PCR instrument. Product name Product code Roche Diagnostics Thermo Fisher Scientific Other instruments may be compatible, however an end...

 Open the catalog to page 4
Genedrive® 96 SARS-CoV-2 Kit-5

Kit components Catalogue number Genedrive 96 SARS-CoV-2 Kit – Low Profile Plate CE-IVD (96 reactions per kit) Genedrive 96 SARS-CoV-2 Kit - Fast Plate CE-IVD (96 reactions per kit) Genedrive 96 SARS-CoV-2 Kit - Bio Plate CE-IVD (96 reactions per kit) 96 well low profile, Bio or fast bar-coded plate containing lyophilised reagent mix in each well. Each plate is supplied foil-sealed Optical film seal Desiccant pouch Ordering details: Ensure the correct plate type is used for the instrument Catalogue number: ID-CoV2-01-LPC Company LightCycler 480 II Real-Time PCR System Catalogue number: ID-CoV2-01-BPC...

 Open the catalog to page 5
Genedrive® 96 SARS-CoV-2 Kit-6

Specimen collection, handling and storage The Genedrive 96 SARS-CoV-2 Kit is intended for use on RNA extracts stored in viral transport media and derived from upper respiratory specimens. Warnings and precautions • RNA is extremely susceptible to shearing by freezethaw cycles. Ensure freeze and thaw of all fresh specimens and extracted RNA from specimens is kept to an absolute minimum to prevent failed tests Due to the sensitivity of RNA toward shearing by freeze thaw, do not use specimens that have undergone more than one freeze-thaw cycle either pre- or post-extraction. • RNA samples are susceptible...

 Open the catalog to page 6
Genedrive® 96 SARS-CoV-2 Kit-7

Limitations of use The Genedrive 96 SARS-CoV-2 Kit has been validated for use with upper respiratory specimens run on the Roche LightCycler 480 II, Applied Biosystems 7500 Fast Real-Time PCR systems and Bio-Rad CFX96. False positive results may be caused by: Any deviations from the procedures detailed within this IFU may result in erroneous results or failure. • Local contamination caused by unsuitable handling of PCR amplicons Samples should be handled and treated as if they are infectious and all biosafety precautions should be followed. False negative results may be caused by: All results...

 Open the catalog to page 7
Genedrive® 96 SARS-CoV-2 Kit-8

Test procedure 1. RNA Extraction The Genedrive 96 SARS-CoV-2 Kit is intended for use with commercially available RNA extraction kits and Human Lymphocyte RNA (AMSBIO, ATR1254148-10) and is validated for use with the RNA extraction kits listed in Table 3. Use of the Extraction Control - Human Lymphocyte RNA Human Lymphocyte RNA may be used as an optional extraction control to assess RNA extraction performance. When included in the RNA extraction procedure, successful RNA extraction and test performance will be indicated by positive detection of RNase P. The Extraction Control is supplied in an...

 Open the catalog to page 8
Genedrive® 96 SARS-CoV-2 Kit-9

Table 3 RNA extraction kits and extraction control requirements Extraction Process Control Product code Lysis buffer volume/ specimen (µL) (A) Quantity of extraction control required per extraction (ng) (B) Quantity of extraction control required per 20 µL assay (ng) RNAdvance Viral RNA Purification Kit Beckman Coulter QIAamp Viral RNA Mini Kit Virus/Pathogen Kit with QIAamp MiniElute Virus Spin Kit RNAdvance Viral RNA purification kit (Beckman Coulter): Reagent volume produced will allow for at least 96 extractions (with 15% overage) 1. Remove a single use aliquot (30 μL of 5 ng/μL) of the RNA...

 Open the catalog to page 9
Genedrive® 96 SARS-CoV-2 Kit-10

The procedure must be conducted in accordance with the manufacturer’s instructions for use. Ensure that specimen swabs have been handled according to the conditions set out in the Specimen collection, handling and storage section of this IFU. If using an automated extraction system, perform the extraction using specimen input to eluate volume ratio of 5:1 - for example, use a 200 μL specimen input volume with a 40 μL elution volume. Alternative nucleic acid extraction systems and kits might also be appropriate. If using a spin column based sample preparation procedure including washing buffers...

 Open the catalog to page 10

All Genedrive catalogs and technical brochures

  1. Genedrive®

    3  Pages

*Prices are pre-tax. They exclude delivery charges and customs duties and do not include additional charges for installation or activation options. Prices are indicative only and may vary by country, with changes to the cost of raw materials and exchange rates.