Lexogen QuantSeq Data USING PARTEK® FLOW® SOFTWARE
Lexogen QuantSeq Data USING PARTEK® FLOW® SOFTWARE
The document provides an overview of using Partek Flow software for analyzing Lexogen QuantSeq 3’ mRNA-Seq data. It highlights the software's user-friendly interface, powerful statistical tools, and interactive visualizations, designed to facilitate biological data analysis without requiring bioinformatics expertise.
Key Features
- All-in-one solution from raw data to biological insights.
- Automated QuantSeq data processing from FASTQ files to gene counts.
- Point-and-click graphical interface for easy data analysis.
- Tools for pattern discovery using t-SNE, PCA, and clustering.
- Differential expression analysis with Partek's award-winning algorithm.
- Biological insights through Gene Ontology (GO) and pathway enrichment.
- Results can be accessed and downloaded at any step, with visualizations saved as publication-quality images.
- Accessible via web browser on any connected device with cloud, cluster, and laptop deployment options.
QuantSeq Pipeline
- Starts with unaligned reads in FASTQ format or quantified data.
- Removes poly-A tails and sequencing adaptors, trims reads based on quality.
- Aligns reads to reference genomes using the STAR aligner with Lexogen parameters.
- Maps aligned reads to public or custom transcriptome databases.
Data Analysis and Visualization
- QA/QC reports for each pipeline step.
- Multiple data normalization options.
- t-SNE and Principal Components Analysis for data exploration.
- Differential expression analysis using GSA and ANOVA.
- Hierarchical and K-means clustering.
- Interactive visualizations including dot plots, volcano plots, heat maps, scatter plots, Venn diagrams, and chromosome viewer.
- Gene Ontology and pathway enrichment analysis.
- Data can be downloaded at any analysis step, and visualizations saved as publication-quality images.
Contact Information
For more information, visit www.partek.com or contact Partek and Lexogen through the provided phone numbers and email addresses.
Catalog excerpts
Find the biological meaning in your Lexogen QuantSeq 3’ mRNA-Seq data using the Partek® Flow® QuantSeq analysis pipeline built by Lexogen and Partek scientists. Partek Flow guides you from data to discovery with an intuitive user interface, powerful statistics, and interactive visualizations; no bioinformatics experience needed. Designed for the way biologists think, Partek Flow is accessible without sacrificing flexibility. QuantSeq Data Analysis with Partek Flow • Partek Flow is an all-in-one solution that takes you from raw data to biological insights • The Partek Flow QuantSeq pipeline automates QuantSeq data processing from FASTQ files to gene counts for fast and easy analysis • Quickly analyze your gene count data in the easy-to-use point-and-click graphical interface • Find new patterns in your data using t-SNE, PCA, and clustering tools enabled by powerful statistics and interactive visualizations • Identify differentially expressed genes with awardwinning Partek gene specific analysis algorithm • Discover biological insights with GO and pathway enrichment • Quickly and easily access your results - download your data at any step and save visualizations as publication-quality images • Work from anywhere using a web browser on any connected device • Cloud, cluster, and laptop deployment options • Try it yourself with a free trial at www.partek.com • • turning data into discovery® www.partek.com North America +1 (314) 878-2329 Europe +44 20-7193-2691 | Asia/Australasia +65-6808 8706 Partek is a registered trademark of Partek Incorporated. All other brand or product names mentioned are trademarks owned by their respective companies or organizations. Copyright © 2017 Partek Incorpor
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Seamless integration with Lexogen QuantSeq data 3 Easy-to-use graphical interface 3 Customizable and shareable pipelines 3 Deployment on public/private cloud, cluster, or desktop 3 Multi-core computing and scalable power 3 Accessible through a web browser on any connected device 3 Flexible user and group management options 3 Strong data security 3 Audit trail for every analysis 3 QuantSeq Pipeline Starts with unaligned reads in FASTQ format or quantified data 3 Removes poly-A tails and sequencing adaptors 3 Trims reads based on quality 3 Aligns reads to any...
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