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Nanodigmbio-NadPrep IGTR Multiplex PCR Library Prep Kit

Nanodigmbio-NadPrep IGTR Multiplex PCR Library Prep Kit

Nanodigmbio-NadPrep IGTR Multiplex PCR Library Prep Kit

Product catalog summary
Background
The immune system is crucial for defending the body against harmful invaders. B lymphocytes and T lymphocytes are key components, recognizing antigens through B cell receptors (BCRs) and T cell receptors (TCRs), respectively. The diversity of these receptors forms the immune repertoire, essential for effective antigen recognition and response. The variable (V) region of IG and TR molecules, particularly the CDR3 region formed by V(D)J recombination, is highly diverse and critical for antigen interaction.

Introduction
The NadPrep IGTR Multiplex PCR Library Prep Kit is designed for multiplex amplification of immune antigen receptors, targeting IGH, IGL, IGK, TRA, TRB, TRG, and TRD loci. It enriches CDR3 regions to assess B and T cell diversity and clonality via NGS. The kit includes IG and TR Primer Mixes for flexible workflows and supports sequencing on Illumina® and MGI platforms.

Workflow
The workflow involves several steps: 1st PCR amplification (55 min), post-1st PCR cleanup (30 min), 2nd PCR indexing amplification (30 min), and post-2nd PCR cleanup (30 min). The kit allows for single-tube or dual-tube workflows, with sequencing performed on NovaSeq 6000 (PE150).

Performance
The kit offers flexible primer mix combinations for precise target region amplification. A study using RAMOS and JURKAT cell line gDNA demonstrated effective library preparation with both independent and combined amplification approaches. The analysis tool generated clone lists for IG and TR sequences, highlighting the kit's capability in detecting diverse CDR3 sequences.

Ordering Information
The kit is available in two configurations: 6 reactions (Catalog# 1300001) and 96 reactions (Catalog# 1300002).

Disclaimer
The product is for research use only and not authorized for clinical applications unless explicitly agreed upon. Users are responsible for regulatory and legal obligations related to product use.
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Catalog excerpts

Nanodigmbio-NadPrep IGTR Multiplex PCR Library Prep Kit-1

The immune system serves as the core defense mechanism against foreign and harmful invaders in the human body. As the "special forces" of adaptive immunity, B lymphocytes recognize antigens via B cell receptors (BCRs, i.e., immunoglobulins, IG), while T lymphocytes utilize T cell receptors (TCRs/TRs) to initiate precise immune responses. The collective diversity of functional BCRs and TCRs within an individual constitutes the immune repertoire. Its dynamic characteristics determine the breadth and efficacy of antigen recognition and response, while also reflecting the evolution of immune status. The N-nucleotides region of IG and TR molecules contains a highly variable domain termed the variable (V) region. Within the V-segments, three hypervariable loops-complementarity-determining regions (CDR1, CDR2, and CDR3)—serve as antigenbinding domains. Among them, CDR3 is formed through V(D)J recombination, involving the joining of V-genes with diversity (D)-, and joining (J)-segments. Due to nucleotide insertions or deletions at V(D)J junctions, CDR3 exhibits the highest diversity and directly interacts with antigens, making it the focal point for immune repertoire analysis. NadPrep IGTR Multiplex PCR Library Prep Kit is multiplex amplification-based library preparation kit. It utilizes hundreds of primers targeting IGH, IGL, IGK, TRA, TRB, TRG, and TRD loci for adaptive immune antigen receptors to efficiently enrich CDR3 regions across the immune repertoire, enabling precise assessment of B and T cell diversity and clonality via NGS. This kit features a modular primer design with two independent primer mixes: IG Primer Mix (covering IGH/IGL/IGK) and TR Primer Mix (covering TRA/TRB/TRG/TRD), supporting both single-tube (IG or TR) and dual-tube (IG + TR) workflows. This kit supports 50-2,000 ng of gDNA or cDNA (reverse transcription to generate 1st-strand cDNA) as initial samples. Libraries can be sequenced directly on Illumina® platforms or circularized using the NadPrep Universal Circularization Kit v2 (Cat # 1002241) for MGI platforms. PE150 sequencing is recommended. Workflow 1st PCR (Multiplex) Amplification Library Evaluation IG Primer Mix/TR Primer Mix Multiplex Index Primer Mix #

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Nanodigmbio-NadPrep IGTR Multiplex PCR Library Prep Kit-2

Flexible Combination of IG/TR Primer Mixes in Separate Tubes for Precise Amplification of Target Regions Spiking 0.001% of a mixture of RAMOS and JURKAT cell line gDNA into 2 μg leukocyte-derived gDNA, libraries were prepared using NadPrep IGTR Multiplex PCR Library Prep Kit, with independent amplification (IG-only or TR-only) or combined amplification (IG + TR). Table 1. Clone list generated by analysis tool. Source Cell Line Clone List Generated by Analysis Tool Reads Count Rank Reads Count Rank Reads Count Rank Figure 1. CDR3 diversity analysis using the NadPrep IGTR Multiplex PCR Library...

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