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Reagents, Solvents and Accessories

Reagents, Solvents and Accessories
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Reagents, Solvents and Accessories

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Overview: This document serves as a comprehensive guide to Thermo Scientific reagents, solvents, and accessories used in Gas Chromatography (GC), High Performance Liquid Chromatography (HPLC), and Mass Spectrometry (MS). It covers derivatization reagents, procedures, and applications for specific functional groups and drugs-of-abuse.
1. Derivatization Reagents for Specific Functional Groups:
  • Silylation Reagents: Used to form TMS amides, with reagents like BSA, BSTFA, and MSTFA. TMCS is used as a catalyst.
  • Acylation Reagents: Includes MBTFA and TFAA for forming trifluoroacetamides, suitable for trace analysis with ECD detection.
  • Alkylation Reagents: MethElute Reagent is used for on-column derivatization, particularly for drugs.
2. Derivatization Reagents for Drugs-of-Abuse:
  • Amphetamines: Reagents like BSTFA and TFAA are used.
  • Barbiturates: MethElute Reagent and PFBBr are commonly used.
  • Cocaine: Benzoylecgonine is derivatized using BSTFA and MTBSTFA.
  • Marijuana: THC metabolites are derivatized using BSA and BSTFA.
  • Opiates: Morphine derivatization involves reagents like BSTFA and MBTFA.
3. Gas Chromatography Reagents:
  • Introduction to Derivatization: Essential for making compounds suitable for analysis, improving efficiency, and enhancing detectability.
  • Suitability and Efficiency: Modifies chemical structures to make nonvolatile or insoluble compounds analyzable by GC or HPLC, improving peak resolution and reducing interference.
4. HPLC Ion Pair Reagents:
  • Includes binding and elution buffers for affinity purification and solvents for amino acid analysis.
5. Sample Handling:
  • Details on vials, closures, and equipment for heating, stirring, and evaporation.
Conclusion: The document is a detailed reference for selecting appropriate reagents and procedures for chromatographic analysis, emphasizing the importance of derivatization in enhancing analytical capabilities.
Detectability and Derivatization: Enhancing detectability in material analysis is crucial, particularly for smaller quantities. This can be achieved through improved detector design and derivatization, which involves modifying compounds to increase their interaction with detectors.
Silylation and Reagents: Silylation is a common derivatization method in gas chromatography, involving the replacement of active hydrogens with trimethylsilyl groups. Various reagents are available, differing in reactivity and selectivity.
Thermo Scientific Silylation Reagents: Details specific Thermo Scientific reagents such as BSTFA, MSTFA, BSA, and MTBSTFA, each with unique properties and applications.
Protocols and Applications: Protocols for using these reagents involve combining samples with the reagent and solvent, followed by heating and analysis via gas chromatography.
Ordering Information: Provides product numbers and packaging sizes for ordering the various silylation reagents from Thermo Scientific.
Specifications:
  • TMSI (N-Trimethylsilylimidazole): Used for silylation of hydroxyl groups in carbohydrates and steroids.
  • HMDS (Hexamethyldisilazane): Popular for silylation of sugars.
  • TMCS (Trimethylchlorosilane): Acts as a catalyst for forming trimethylsilyl ethers.
  • MOX Reagent: Converts keto groups to methoxime derivatives.
  • Tri-Sil Reagents: Various formulations for one-step derivatization of polar compounds.
Procedures:
  • Protocol 1 (TMSI): Silylation of hydroxyl groups and acylation of amino groups for catecholamines.
  • Protocol 2 (TMSI): Silylation of hydroxyl groups on highly hindered steroids.
  • Protocol 3 (TMSI): General silylation procedure for various compounds.
Recommendations:
  • Use appropriate solvents like pyridine for optimal reactions.
  • Avoid water or alcohol as they react with TMS reagents.
Acylation Reagents:
  • Acylation involves converting compounds with active hydrogens into derivatives suitable for chromatography.
  • Perfluoroacyl groups enhance detectability by electron capture detectors (ECD).
Key Products and Protocols:
  • MBTFA: Used for trifluoroacylating primary and secondary amines, hydroxyl, and thiol groups.
  • Perfluoroacylimidazoles (TFAI and HFBI): Effective for acylating hydroxyl groups and amines.
Recommendations and Best Practices:
  • Fluorine atoms enhance sensitivity in ECD and GC/MS applications.
  • Ensure proper handling and storage of hazardous materials.
Conclusion: The document serves as a comprehensive guide for using Thermo Scientific reagents in chromatography, providing detailed protocols and product information to ensure effective and safe laboratory practices.
Introduction to HPLC Ion Pair Reagents: High-purity reagents are essential for effective separation in reverse-phase HPLC analysis, especially for highly charged acidic and basic compounds.
Theories of Reverse-Phase Ion Pair Chromatography: Two main theories explain this process: one involves the formation of neutral ion pairs, and the other suggests an active ion exchange surface is created.
Heptafluorobutyric Acid: Used for the reverse-phase HPLC separation of proteins and peptides, offering high purity and stability.
Triethylamine (TEA): An ion-pairing reagent that enhances selectivity in HPLC separations.
Formic Acid: Used in LC-MS applications to improve peak shapes without suppressing MS ionization.
Trifluoroacetic Acid (TFA): A common ion pairing agent in reverse-phase peptide separations.
HPLC/Spectrophotometric Grade Solvents: These ultra-pure solvents are essential for HPLC and spectrophotometric applications.
Peptide Retention Standard for Reverse-Phase HPLC: Aids in predicting peptide retention times, improving the efficiency of peptide purification and column performance monitoring.
Introduction to Derivatization in HPLC: Derivatization is a chemical modification process used in HPLC to enhance selectivity and sensitivity.
Pre- and Post-Chromatographic Techniques: Pre-chromatographic techniques improve stability, resolution, peak symmetry, and retention of solutes.
FDAA (Marfey’s Reagent): Used for separating and quantifying optical isomers of amino acids via reverse-phase HPLC.
Preparation of FDAA Derivatives: The protocol involves mixing the sample with FDAA in acetone, heating, cooling, and analyzing under specified conditions.
p-Bromophenacylate Reagent: Used for preparing phenacyl esters, providing quantitative yields with minimal side reactions.
Hypersil GOLD Columns: These columns offer excellent peak shape and are available in various chemistries to optimize separations.
History of Amino Acid Analysis: The development of amino acid analysis began in the 19th century, evolving significantly with the introduction of chromatography.
Introduction to Amino Acid Analysis: Amino acid analysis has seen improvements through ion exchange chromatography, focusing on both the analytical system and instrumentation.
Alternative Methods for Amino Acid Separation: Alternatives to ion exchange chromatography include pre-column derivatization methods using reverse-phase HPLC.
Sample Preparation and Hydrolysis: Protein extraction and purification are crucial for determining amino acid content.
Thermo Scientific BioBasic HPLC Columns: These columns offer improved performance for peptides, proteins, and biomolecules.
Ninhydrin-Based Monitoring Systems: Widely used for quantitative amino acid determination post-ion exchange chromatography.
Conclusion: Advancements in amino acid analysis have improved the efficiency and sensitivity of separation and quantitation methods.
Ninhydrin Reaction with Amino Acids: The document outlines the reaction scheme of ninhydrin with amino acids, leading to the formation of Ruhemann's Purple.
Thermo Scientific Pierce Ninhydrin: Highlights the use of Thermo Scientific Pierce Ninhydrin in amino acid chromatography.
PITC (Phenylisothiocyanate): Used for the quantitative pre-column derivatization of amino acids by reverse-phase HPLC.
Dabsyl Chloride: Used for pre-column derivatization and detection of amino acids at sub-picomolar levels.
FDAA (Marfey's Reagent): Used for derivatizing optical isomers of amino acids.
Ultra-Pure Solvents for Amino Acid Analysis: Thermo Scientific provides HPLC grade solvents and water, ensuring low UV absorbance and high purity.
Sample Handling and Vials: Describes various sample handling products, including Reacti-Vial Small Reaction Vials and pre-cleaned vials.
Overview: The document provides detailed information on Thermo Scientific Screw Cap Septum Vials and associated accessories.
Specifications: The Screw Cap Septum Vials are available in clear and amber, with sizes ranging from 1.5 ml to 40 ml.
Procedures and Applications: The vials are suitable for storing reagents and standards with instant syringe access and for small derivatization reactions.
Accessories and Features:
  • Teflon/Silicone Discs: Offer excellent resealability and are suitable for use with organic solvents and silylation reactions.
  • Teflon/Rubber Laminated Discs: Provide a highly inert seal, suitable for corrosive substances.
  • Mininert Valves: Offer a leak-tight closure for vials, ideal for chemicals that deteriorate or evaporate in conventional containers.
Reacti-Therm System: Includes modules for heating and stirring, with options for single or triple block configurations.
Reacti-Vap Evaporators: Allow for the simultaneous or separate delivery of nonreactive pressurized gas to samples, enhancing evaporation efficiency.
Reacti-Block Aluminum Blocks: Available in various configurations to accommodate different vial sizes and are designed for optimal thermal conductivity.
Recommendations: Suggests using Teflon/Silicone Discs for organic solvents and Teflon/Rubber Laminated Discs for corrosive substances.
Conclusion: Thermo Scientific offers a comprehensive range of products for sample storage and laboratory applications, emphasizing convenience, versatility, and reliability in maintaining sample integrity.
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Catalog excerpts

Reagents, Solvents and Accessories-1

Thermo Scientific Reagents, Solvents and Accessories Part of Thermo Fisher Scientific Gas Chromatography High Performance Liquid Chromatography Mass Spectrometry

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Reagents, Solvents and Accessories-2

Thermo Scientific Products for GC and HPLC Derivatization Reagents for Specific Functional Groups 1 Derivatization Reagents for Drug-of-Abuse 2-3 Specialized Products and Reagents 20 HPLC Ion Pair Reagents 24-40 Binding and Elution Buffers for Affinity Purification 25 HPLC Ion Pair Reagents 26 HPLC/Spectrophotometric Grade Solvents 27 Derivatization and Visualization Reagents for HPLC 28-30 Amino Acid Analysis 32-41 Sample Preparation and Hydrolysis 34 Fluorometric Detection Reagents for Amino Acids 36 Ninhydrin Detection Reagents for Amino Acids 37-38 High-Purity Pre-Column Derivatization Reagents...

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Reagents, Solvents and Accessories-3

Derivatization Reagents for Specific Functional Groups Functional Group Silylation BSA BSTFA BSTFA+TMCS Amides MSTFA O MSTFA+TMCS O Tri-Sil Reagents –C–NH2 MTBSTFA –C–NH2 Primary MTBSTFA+TBDMCS O Acylation MBTFA O TFAA –C–NHR –C–NHR PFAA TMS Amides Difficult to form due to steric hindrance TMS Amides TMS Amides TMCS used as a catalyst TMS Amides Reaction byproducts more volatile TMS Amides TMS Amides TBDMCS Amides Difficult to form; very stable TBDMCS Amides TBDMCS aids derivatization Trifluoroacetamides Trifluoroacetamides Pentafluoropropionamides Secondary HFBA Alkylation MethElute Reagent...

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Reagents, Solvents and Accessories-4

Derivatization Reagents for Drugs-of-Abuse Reagent Reference Amphetamines Amphetamines BSTFA 1 NH2 Amphetamines HFAA 2-5 CH Amphetamines HFAA/PFAA 6 C6H5 CH2 CH 3 Amphetamines MSTFA with TMCS 7 Amphetamines TFAA 7,8 Methamphetamine TFAA 9,10 Barbiturates BSTFA 1 MethElute Reagent (TMPAH) 11-13 O O NH Methylate Reagent (DMFDMA) 14,15 CH2 CH CH2 PFBBr 16 CH3 Cocaine Benzoylecgonine CH3 N COOH BSTFA/Butyl Iodine/TMAH 17 BSTFA 1,18 MTBSTFA 19 PFAA/PFPOH 9,20 BSA 21 BSTFA 22 MSTFA 21 TFAI 23 Marijuana THC metabolites COOH OH BSA 24 BSTFA/BSTFA+1% TMCS 24-27 BSTFA/TMCS/TMSI 24 MSTFA 9 MSTFA/MSTFA+1%...

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Reagents, Solvents and Accessories-5

References   1. Dutt, M.C. (1982). J. Chromatogr. 248, 115-124.   2. Wu, A.H.B., et al. (1992). J. Anal. Toxicol. 16, 137-141.   3. Thurman, E.M., et al. (1992). J. Anal. Toxicol. 16, 19-27.   4. Reimer, M.L., et al. (1993). Biol. Mass Spectrom. 22, 235-242.   5. Yamamoto, T., et al. (1989). J. Anal. Toxicol. 13, 117-119.   6. Wu, A.H.B., et al. (1992). Biol. Mass Spectrom. 21, 278-284.   7. ood, H.D. and Knitter, J.A. (1991). Capillary Chromatography. R W.G. Jennings, ed., pp. 115-130.   8. DePace, A., et al. (1990). J. Forensic Sci. 35(6), 1431-1435.   9. Mulé, S.J. and Casella, G.A. (1998)....

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Reagents, Solvents and Accessories-6

Introduction to Gas Chromatography Reagents Efficiency Direct analysis can be difficult when compounds interact with each other or with the column. These interactions can lead to poor peak resolution and/or asymmetrical peaks that make proper peak integration difficult or impractical. This interference can be reduced with conversion to derivatized products.13,14 Compounds that exhibit co-elution can often be separated by using the appropriate derivatization methods. Detectability As demand increases for the analysis of increasingly smaller amounts of materials, it becomes important to extend...

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Reagents, Solvents and Accessories-7

Thermo Scientific Silylation Reagents Silylation and Silylation Reagents Only Thermo Scientific Reagents offer the combination of variety, quality and reliability. Silyl derivatives are the most widely used derivatives for gas chromatographic applications. Usually they are formed by the replacement of the active hydrogens from acids, alcohols, thiols, amines, amides and enolizable ketones and aldehydes with the trimethylsilyl group. A variety of reagents is available for the introduction of the trimethylsilyl group. These reagents differ in their reactivity, selectivity and side reactions and...

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Reagents, Solvents and Accessories-8

Thermo Scientific Silylation Reagents For excellent chromatographic separations. The reagent to choose for difficult-to-silylate compounds. CH 3 BSTFA is a powerful trimethylsilyl donor, with donor strength that is comparable to its unfluorinated analog BSA [N,O-Bis(trimethylsilyl) acetamide]. BSTFA reacts to replace labile hydrogens on a wide range of polar compounds with a -Si(CH3)3 group. This physical characteristic is particularly useful in the gas chromatography of some lower boiling TMS-amino acids and TMS Krebs cycle acids. PROTOCOL Thermo Scientific BSTFA + 1% TMCS is ideal for derivatizing...

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Reagents, Solvents and Accessories-9

MSTFA and MSTFA 1% TMCS Offers maximum volatility. The perfect reagent for volatile TMS derivatives. CH 3 Highlights: • Trimethylsilyl donor strength comparable to BSA and BSTFA • Reacts to replace labile hydrogens on a wide range of polar compounds with a -Si(CH3)3 group • Used to prepare volatile and thermally stable derivatives for GC and MS • Primary advantage of Thermo Scientific MSTFA is the volatility of its byproduct, N-methyltrifluoroacetamide; MSTFA is the most volatile TMS-amide available which has an even lower retention time than MSTFA • Often TMS derivatives of small molecules can...

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Reagents, Solvents and Accessories-10

Thermo Scientific Silylation Reagents MTBSTFA and MTBSTFA + 1% TBDMCS Offers stable TBDMS (tert-butyldimethylsilyl) derivatization. The strongest hydroxyl silylator available for carbohydrates and steroids. Sakauchi and Horning have shown TMSI to be an all-purpose reagent for unhindered steroids to highly hindered steroids. Highlights: • Derivatizes hydroxyl, carboxyl, thiol and primary and secondary amines • Typical yields are >96% • Provides TBDMS ethers that are 104 times more stable to hydrolysis than TMS ethers • Reaction byproducts are neutral and volatile • Derivatives have a high molecular...

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Reagents, Solvents and Accessories-11

The popular choice for silylation of sugars and related substances. An excellent catalyst for difficult-to-silylate compounds. Thermo Scientific HMDS greatly extends the practical range of GC, improving chromatographic results in the silylation of sugars A critical study of the optimal proportions of HMDS and trimethyl- chlorosilane for producing maximum yield of trimethylsilyl derivatives was conducted by Sweeley, etal. This protocol describes the method of Sweeley, etal. for the trimethylsilylation of sugars and related substances. 1. Combine 10 mg or less carbohydrate sample, 1.0 ml anhydrous...

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